DNA Binding Motif

						

			
Accessions: UN0463.1 (JASPAR 2024)

			
Names: Pax3-7-like
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: wwwawwaATTGATtwwttww
Weblogo: 
PSSM: P0      A      C      G      T
01    280    212    225    283      w
02    286    213    221    279      w
03    314    218    217    251      w
04    313    214    227    246      a
05    279    209    209    303      w
06    255    174    151    420      w
07    456    165    211    168      a
08    915     23     26     36      A
09     48     40     29    883      T
10     31    118     57    794      T
11    146     53    749     52      G
12    876     32     49     43      A
13     29     21     21    930      T
14    161    202    158    479      t
15    390    153    181    276      w
16    298    202    212    289      w
17    242    219    220    319      t
18    234    206    226    334      t
19    267    212    219    303      w
20    266    217    221    295      w
Type: Heterodimer
Binding TFs: Q4H2Y9 (Homeobox domain, Homeobox KN domain)
Q4H2Y9
			
	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.