DNA Binding Motif
| Accessions: | UP00043A_1 (UniPROBE 20160601) |
| Names: | B-cell CLL/lymphoma 6, B-cell CLL/lymphoma 6 member B protein, Bazf, Bcl6-associated zinc finger protein, Bcl6b, member B |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | wcTTTCkAGGAAttys |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.35 0.08 0.20 0.37 w 02 0.17 0.60 0.05 0.18 c 03 0.09 0.11 0.06 0.75 T 04 0.13 0.08 0.08 0.71 T 05 0.03 0.01 0.02 0.94 T 06 0.01 0.87 0.01 0.11 C 07 0.02 0.10 0.45 0.43 k 08 0.80 0.01 0.02 0.17 A 09 0.14 0.06 0.76 0.04 G 10 0.07 0.02 0.81 0.09 G 11 0.88 0.02 0.04 0.06 A 12 0.88 0.03 0.01 0.08 A 13 0.21 0.21 0.04 0.54 t 14 0.24 0.23 0.17 0.36 t 15 0.21 0.30 0.15 0.34 y 16 0.20 0.29 0.33 0.17 s |
| Binding TFs: | UP00043A (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) |
| Binding Sites: | ACCCCGCC ACTAGAAA ACTTTCTA AGGGGCGG ATTTCTAG CCCACCCC CCGCCCCA CCGCCCCG CCTAGAAA CCTCGAAA CTAGAAAG CTTTCTAA GCCCACCC GCTTTCTA GGCGGGGA TCCAGGAA TCCTAGAA TCGAGGAA TCTAAGAA TCTAGGAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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