DNA Binding Motif
| Accessions: | MA2032.1 (JASPAR 2024) |
| Names: | TRB1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 11 |
| Consensus: | aaAACCCTArw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 1648 1082 1087 1126 a 02 2956 451 682 854 a 03 4615 128 96 104 A 04 4355 40 443 105 A 05 138 4706 35 64 C 06 86 4755 36 66 C 07 71 4767 55 50 C 08 108 44 57 4734 T 09 4824 34 44 41 A 10 2829 372 1303 439 r 11 1714 1073 474 1682 w |
| Type: | Heterodimer |
| Binding TFs: | Q8VWK4 (Myb-like DNA-binding domain, linker histone H1 and H5 family) Q8VWK4 |
| Binding Sites: | MA2032.1.1 / MA2032.1.17 / MA2032.1.19 MA2032.1.10 MA2032.1.11 MA2032.1.12 MA2032.1.13 / MA2032.1.5 MA2032.1.14 MA2032.1.15 MA2032.1.16 / MA2032.1.6 MA2032.1.18 MA2032.1.2 MA2032.1.20 MA2032.1.3 MA2032.1.4 MA2032.1.7 MA2032.1.8 MA2032.1.9 |
| Publications: | Schrumpfová PP, Vychodilová I, Hapala J, Schořová Š, Dvořáček V, Fajkus J. Telomere binding protein TRB1 is associated with promoters of translation machinery genes in vivo. Plant Mol Biol : (2016). [Pubmed] |
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