DNA Binding Motif

						

			
Accessions: SOX14_DBD_1 (HumanTF 1.0)

			
Names: SOX14
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 4; Possible binding to single stranded DNA
Length: 12
Consensus: ACAMTAmCATTG
Weblogo: 
PSSM: P0      A      C      G      T
01   2057     21     21    174      A
02      0   2057     11      0      C
03   2057      5      0     33      A
04   2057    726      0      4      M
05      0      7      0   2057      T
06   2057     14     76    495      A
07    940    642    265    210      m
08     14   2057      4      2      C
09   2057      0      1      1      A
10      0      6      0   2057      T
11      0      0      1   2057      T
12      5      2   2057      0      G
Binding TFs: SOX14_DBD (HMG (high mobility group) box, Domain of unknown function (DUF1898))
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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