DNA Binding Motif

						

			
Accessions: MA1368.3 (JASPAR 2024)

			
Names: GT-4
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 12
Consensus: TAACYATGGTTa
Weblogo: 
PSSM: P0      A      C      G      T
01    111     55     37    443      T
02    516     20     44     66      A
03    621      6      4     15      A
04     10    612      9     15      C
05      8    181      2    455      Y
06    571     24     28     23      A
07     20     26     33    567      T
08     87      1    552      6      G
09     20      5    618      3      G
10      9      5      3    629      T
11     63     36     11    536      T
12    396     41     63    146      a
Type: Heterodimer
Binding TFs: Q9LU92 (Myb/SANT-like DNA-binding domain, Myb/SANT-like DNA-binding domain)
Q9LU92
Binding Sites: MA1368.3.1
MA1368.3.10
MA1368.3.11 / MA1368.3.19
MA1368.3.12 / MA1368.3.20
MA1368.3.13
MA1368.3.14
MA1368.3.15
MA1368.3.16 / MA1368.3.7
MA1368.3.17
MA1368.3.18
MA1368.3.2
MA1368.3.3
MA1368.3.4
MA1368.3.5
MA1368.3.6
MA1368.3.8
MA1368.3.9
			
Publications: Nagata T, Niyada E, Fujimoto N, Nagasaki Y, Noto K, Miyanoiri Y, Murata J, Hiratsuka K, Katahira M. Solution structures of the trihelix DNA-binding domains of the wild-type and a phosphomimetic mutant of Arabidopsis GT-1: mechanism for an increase in DNA-binding affinity through phosphorylation. Proteins 78:3033-47 (2010). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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