DNA Binding Motif

						

			
Accessions: HOXC11_methyl_1 (HT-SELEX2 May2017)

			
Names: HOXC11
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 11
Consensus: srTCGTAAAay
Weblogo: 
PSSM: P0      A      C      G      T
01   4356   5743   8840   3004      s
02   6705   1456  15239      0      r
03    144    847      0  21944      T
04    102  21944      0    175      C
05   2858      0  21944      0      G
06      0     27      0  21944      T
07  21944     67     27   6865      A
08  21944     33      0    430      A
09  21944    370     56    330      A
10  21944   9666   5249  10679      a
11   4664   7339   4120   5821      y
Binding TFs: HOXC11 (Homeobox domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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