DNA Binding Motif

						

			
Accessions: SOX2_HUMAN.H10MO.B|M01516 (HOCOMOCO 10), SOX2_MOUSE.H10MO.A|M01346 (HOCOMOCO 10)

			
Names: SOX2
Organisms: Homo sapiens, Mus musculus
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: SOX-related factors{4.1.1}; Group B{4.1.1.2}
Length: 16
Consensus: cYwTTGTyaTgcaaAt
Weblogo: 
PSSM: P0      A      C      G      T
01     50    425     73     86      c
02     13    446     15    160      Y
03    335      3      3    293      w
04      2      6      3    623      T
05      9      0      4    621      T
06     56     67    498     13      G
07     59      2     36    537      T
08     72    181     72    309      y
09    407    103     27     97      a
10     16     27     28    563      T
11     40     83    402    109      g
12     39    399     99     97      c
13    421     40     35    138      a
14    350     58    132     94      a
15    438     64     61     71      A
16    158    110    103    263      t
Type: Heterodimer
Binding TFs: SOX2_HUMAN (HMG (high mobility group) box, Domain of unknown function (DUF1898), SOX transcription factor)
SOX2_MOUSE (HMG (high mobility group) box, Domain of unknown function (DUF1898), SOX transcription factor)
			
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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