DNA Binding Motif

						

			
Accessions: CRX_MOUSE.H10MO.A|M01044 (HOCOMOCO 10)

			
Names: Crx
Organisms: Mus musculus
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: Paired-related HD factors{3.1.3}; OTX{3.1.3.17}
Length: 12
Consensus: wragrrGATTAr
Weblogo: 
PSSM: P0      A      C      G      T
01    162     68     45    225      w
02    258     50    136     56      r
03    311     44     89     56      a
04    102     40    248    110      g
05    197     79    156     68      r
06    168      4    324      4      r
07      2     13    485      0      G
08    408     87      4      1      A
09      0      0      0    500      T
10      7      8      3    482      T
11    449      0      3     48      A
12    214     39    196     51      r
Binding TFs: CRX_MOUSE (Homeobox domain, Otx1 transcription factor)
			
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.