DNA Binding Motif

						

			
Accessions: 6cnc_R (3D-footprint 20231221)

			
Names: Transcription factor IIIB 70 kDa subunit,TATA-box-binding protein,Transcription factor IIIB 70 kDa subunit
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Yeast RNA polymerase III open complex
Length: 26
Consensus: AnnnnnnnnnnnnnACTAATAnnTGT
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02     24     24     24     24      n
03     24     24     24     24      n
04     24     24     24     24      n
05     24     24     24     24      n
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13     24     24     24     24      n
14     24     24     24     24      n
15     96      0      0      0      A
16      0     96      0      0      C
17      0      0      0     96      T
18     96      0      0      0      A
19     75      7      7      7      A
20      0      0      0     96      T
21     73      7      7      9      A
22     24     24     24     24      n
23     24     24     24     24      n
24      7      9      7     73      T
25      0      0     96      0      G
26      9      7      7     73      T
Binding TFs: 6cnc_R (Transcription factor TFIID (or TATA-binding protein, TBP), Transcription factor TFIIB repeat, Brf1-like TBP-binding domain, TFIIB zinc-binding)
Binding Sites: 6cnc_X
6cnc_Y
			
Publications: Han Y, Yan C, Fishbain S, Ivanov I, He Y. Structural visualization of RNA polymerase III transcription machineries. Cell Discov : (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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