DNA Binding Motif

						

			
Accessions: FOXJ3_TBX21_1 (HumanTF2 1.0)

			
Names: FOXJ3_TBX21
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 24
Consensus: arsyGtkRawarawAACAACACch
Weblogo: 
PSSM: P0      A      C      G      T
01   5000   1182   2364   1689      a
02   3741   2321   3275    898      r
03    802   4135  10235   1178      s
04     23   3213    106   7022      y
05    227      0  10235     20      G
06   2084   1622    512   6017      t
07   1527   2072   2690   3945      k
08   7195     64   2599    376      R
09   4630   1964   1480   2161      a
10   3261   1209   2039   3725      w
11   4731   1964   1321   2218      a
12   4282    835   3143   1974      r
13   5200   1271   1466   2297      a
14   4024   1433    257   6211      w
15  10235    824     29    979      A
16  10235     28   3324    885      A
17     26  10235     80   1780      C
18  10235    191    331     87      A
19  10235    482    258    405      A
20     28  10235      0    412      C
21  10235     31   1997      0      A
22    726  10235   1342    140      C
23   2351   4865   1119   1899      c
24   2704   2749    595   4187      h
Type: Heterodimer
Binding TFs: TBX21_TF2 (T-box)
FOXJ3_TF1 (Fork head domain)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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