DNA Binding Motif

						

			
Accessions: UP00041A_2 (UniPROBE 20160601)

			
Names: FKHL-13, Fkhl13, forkhead box J1, Forkhead box protein J1, Forkhead-related protein FKHL13, Foxj1, Hepatocyte nuclear factor 3 forkhead homolog 4, HFH-4, Hfh4
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 15
Consensus: ayrtcAyAACAacac
Weblogo: 
PSSM: P0      A      C      G      T
01   0.43   0.17   0.17   0.23      a
02   0.19   0.28   0.20   0.33      y
03   0.34   0.19   0.37   0.10      r
04   0.08   0.19   0.23   0.50      t
05   0.19   0.54   0.19   0.09      c
06   0.81   0.03   0.15   0.01      A
07   0.04   0.55   0.04   0.37      y
08   0.85   0.03   0.07   0.05      A
09   0.80   0.14   0.03   0.03      A
10   0.10   0.80   0.06   0.04      C
11   0.69   0.03   0.12   0.15      A
12   0.52   0.14   0.18   0.16      a
13   0.17   0.39   0.23   0.21      c
14   0.44   0.20   0.23   0.14      a
15   0.23   0.45   0.15   0.17      c
Binding TFs: UP00041A (Fork head domain)
Binding Sites: GTAAACAA
AAACAAAA
AAACAAAC
AACAAAAC
AACAAACA
ACAAACAA
ACAACAAA
AGTAAACA
ATAAACAA
ATAAACAT
CAAACAAA
CAACAAAA
CAACAAAC
CACAACAA
GTAAACAC
GTCAACAA
TAAACAAA
TAAACACA
TAAACATA
TCAACAAA
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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