DNA Binding Motif
| Accessions: | UP00270A_1 (UniPROBE 20160601) |
| Names: | "MSS1, Nrg1, Transcriptional regulator NRG1, YD5112.01C, YDR043C, Zinc finger protein MSS1" |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 20 |
| Consensus: | ytvrrymAGGGTCCwwbgcw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.18 0.40 0.14 0.27 y 02 0.24 0.23 0.20 0.33 t 03 0.29 0.25 0.28 0.18 v 04 0.26 0.24 0.26 0.24 r 05 0.42 0.11 0.27 0.20 r 06 0.21 0.26 0.09 0.44 y 07 0.46 0.49 0.01 0.05 m 08 0.96 0 0.04 0 A 09 0 0 0.99 0 G 10 0 0 0.99 0 G 11 0.01 0 0.99 0 G 12 0.07 0.01 0 0.92 T 13 0 0.93 0 0.06 C 14 0 0.82 0 0.17 C 15 0.50 0.09 0.04 0.37 w 16 0.25 0.20 0.24 0.31 w 17 0.12 0.30 0.27 0.30 b 18 0.22 0.07 0.55 0.16 g 19 0.21 0.40 0.23 0.16 c 20 0.33 0.17 0.23 0.27 w |
| Binding TFs: | UP00270A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) |
| Binding Sites: | AAGGGTCC AAGGGTCT AGACCCTG AGGACCCT AGGGGTCC AGGGTCCA AGGGTCCC AGGGTCCG AGGGTCTA CAGGGACC CAGGGTCC CAGGGTTC GACCCTGA GGACCCTA GGGGTCCA AAGACCCT AAGGGACC AAGGGTTC AGGGCCCT AGGGTCTC |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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