DNA Binding Motif

						

			
Accessions: MA1752.1 (JASPAR 2024)

			
Names: ERF025
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: yykyyGCCGACAmww
Weblogo: 
PSSM: P0      A      C      G      T
01    245    326    129    301      y
02    210    341    137    312      y
03    194    172    257    377      k
04    129    342 76.795    452      y
05    112    356 56.761    476      y
06    239  3.339 757.93      0      G
07      0    950      0 50.083      C
08      0   1000      0      0      C
09      0      0   1000      0      G
10  939.9 16.694      0 43.406      A
11  1.669    998      0      0      C
12    815  3.339    164 18.364      A
13    374    260    174    192      m
14    349    199    112    341      w
15    337    147    234    282      w
Type: Heterodimer
Binding TFs: Q9FJ90 (AP2 domain)
Q9FJ90
			
Publications: Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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