DNA Binding Motif

						

			
Accessions: 1f5t_ABCD (3D-footprint 20231221)

			
Names: DIPHTHERIA TOXIN REPRESSOR
Organisms: Corynebacterium diphtheriae, strain ATCC 700971 / NCTC 13129 / Biotype gravis
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: DIPHTHERIA TOX REPRESSOR (C102D MUTANT) COMPLEXED WITH NICKEL AND DTXR CONSENSUS BINDING SEQUENCE
Length: 15
Consensus: AGGTtAGCCTaACnT
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02      8      8     72      8      G
03      0      0     96      0      G
04      0      0      0     96      T
05      8     16     16     56      t
06     96      0      0      0      A
07      0      0     96      0      G
08      0     96      0      0      C
09      0     96      0      0      C
10      0      0      0     96      T
11     48     16     16     16      a
12     96      0      0      0      A
13      0     96      0      0      C
14     24     24     24     24      n
15      0      0      0     96      T
Binding TFs: 1f5t_A / 1f5t_B / 1f5t_C / 1f5t_D (Iron dependent repressor, N-terminal DNA binding domain, Iron dependent repressor, metal binding and dimerisation domain)
Binding Sites: 1f5t_E
1f5t_F
			
Publications: Chen C.S, White A, Love J, Murphy J.R, Ringe D. Methyl groups of thymine bases are important for nucleic acid recognition by DtxR. Biochemistry 39:10397-407 (2000). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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