DNA Binding Motif

						

			
Accessions: 6ht5_DE (3D-footprint 20231221)

			
Names: Transcription factor SOX-2
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Oct4/Sox2:UTF1 structure
Length: 11
Consensus: CATTGTTATGC
Weblogo: 
PSSM: P0      A      C      G      T
01      5     79      5      7      C
02     81      5      5      5      A
03      0      1      5     90      T
04      0      0      0     96      T
05      5      7     79      5      G
06      0      0      0     96      T
07      7      5      5     79      T
08     96      0      0      0      A
09      0      0      0     96      T
10      5      5     81      5      G
11      0     96      0      0      C
Type: Heterodimer
Binding TFs: 6ht5_D (HMG (high mobility group) box, Domain of unknown function (DUF1898))
6ht5_E (Pou domain - N-terminal to homeobox domain)
Binding Sites: 6ht5_A
6ht5_B
			
	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.