DNA Binding Motif
| Accessions: | 5ef6_J (3D-footprint 20231221) |
| Names: | Homeobox protein Hox-B13 |
| Organisms: | Homo sapiens |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Structure of HOXB13 complex with methylated DNA |
| Length: | 4 |
| Consensus: | TtTa |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 1 0 10 85 T 02 10 10 12 64 t 03 1 0 10 85 T 04 64 12 10 10 a |
| Binding TFs: | 5ef6_J (Homeobox domain) |
| Binding Sites: | 5ef6_K 5ef6_L |
| Publications: | Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed] |
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