DNA Binding Motif

						

			
Accessions: M0390 (AthalianaCistrome v4_May2016)

			
Names: At3g04030.ampDAP, T16550;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 15
Consensus: rrAAkATTCyytttt
Weblogo: 
PSSM: P0      A      C      G      T
01    272    101    158     63      r
02    190     19    335     50      r
03    519     19      4     52      A
04    593      0      0      1      A
05      0      0    242    352      k
06    594      0      0      0      A
07      0      0      0    594      T
08      0      0      6    588      T
09      0    594      0      0      C
10      0    269    109    216      y
11    140    154     68    232      y
12    144     92     16    342      t
13    121     94     78    301      t
14    126    107     92    269      t
15    135    121     88    250      t
Binding TFs: T16550 (Myb-like DNA-binding domain, MYB-CC type transfactor, LHEQLE motif)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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