DNA Binding Motif

Accessions: MA1286.2 (JASPAR 2024)
Names: TCP24
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 8
Consensus: GGGACCAC
Weblogo:
PSSM: P0 A C G T
01 12 11 553 18 G
02 0 0 593 1 G
03 0 0 594 0 G
04 527 24 26 17 A
05 0 594 0 0 C
06 0 594 0 0 C
07 567 0 27 0 A
08 16 560 9 9 C
Type: Heterodimer
Binding TFs: Q9C758 (TCP family transcription factor)
Q9C758
Binding Sites: MA1286.2.16
MA1286.2.3
MA1286.2.18
MA1286.2.1
MA1286.2.10
MA1286.2.11
MA1286.2.12
MA1286.2.13
MA1286.2.14
MA1286.2.15
MA1286.2.17
MA1286.2.19
MA1286.2.2
MA1286.2.20
MA1286.2.4
MA1286.2.5
MA1286.2.6
MA1286.2.7
MA1286.2.8
MA1286.2.9
Publications: Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.