DNA Binding Motif
| Accessions: | UP00296A_1 (UniPROBE 20160601) |
| Names: | Putative 95.7 kDa transcriptional regulatory protein in PAU3-AAD3 intergenic region, Rds1, YCR106W |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 20 |
| Consensus: | yrkmytTCGGCCGAmrkggw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.15 0.41 0.08 0.36 y 02 0.29 0.10 0.41 0.20 r 03 0.18 0.17 0.32 0.34 k 04 0.33 0.37 0.10 0.21 m 05 0.08 0.37 0.19 0.36 y 06 0.17 0.18 0.16 0.48 t 07 0 0.01 0.19 0.80 T 08 0 0.98 0.01 0 C 09 0.01 0.05 0.94 0 G 10 0 0.02 0.97 0 G 11 0 0.97 0.02 0 C 12 0 0.94 0.05 0.01 C 13 0 0.01 0.98 0 G 14 0.80 0.19 0.01 0 A 15 0.35 0.32 0.22 0.12 m 16 0.37 0.14 0.38 0.11 r 17 0.11 0.12 0.49 0.28 k 18 0.19 0.12 0.46 0.22 g 19 0.23 0.23 0.34 0.21 g 20 0.37 0.18 0.14 0.31 w |
| Binding TFs: | UP00296A (Fungal Zn(2)-Cys(6) binuclear cluster domain) |
| Binding Sites: | ACCCGCAG ACCCGCCG AGCGGGTG ATATCCGC ATCTCCGC CACCCGCA CACCCGCC CCACCCGC CCGCCCGC CGGCCGAA CGGCCGAC CGGCCGAG CGGCCGCA CGGCCGCC GCGGCCGA GCGGCCGC GCGGCTAA GCGGGTGA TCGGCCGA AAACCCGC |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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