DNA Binding Motif

						

			
Accessions: 3r8f_ABCD (3D-footprint 20231221)

			
Names: Chromosomal replication initiator protein dnaA
Organisms: Aquifex aeolicus, strain VF5
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Replication initiator DnaA bound to AMPPCP and single-stranded DNA
Length: 10
Consensus: AnnAnnanna
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02     24     24     24     24      n
03     24     24     24     24      n
04     96      0      0      0      A
05     24     24     24     24      n
06     24     24     24     24      n
07     54     13     16     13      a
08     24     24     24     24      n
09     24     24     24     24      n
10     54     16     13     13      a
Binding TFs: 3r8f_A / 3r8f_B / 3r8f_C / 3r8f_D (ATPase family associated with various cellular activities (AAA), Bacterial dnaA  protein, IstB-like ATP binding protein, Bacterial dnaA protein helix-turn-helix)
Binding Sites: 3r8f_E
			
Publications: Duderstadt K.E, Chuang K, Berger J.M. DNA stretching by bacterial initiators promotes replication origin opening. Nature 478:209-13 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.