DNA Binding Motif

						

			
Accessions: RXRA_full_2 (HumanTF 1.0)

			
Names: RXRA
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3
Length: 14
Consensus: rrGGTCATGACCyy
Weblogo: 
PSSM: P0      A      C      G      T
01   2763    436   4899    290      r
02   3819    114   3813     51      r
03    198    150   9461    162      G
04    138    121   9283    668      G
05    150    182    372   9468      T
06     75   6257    257    161      C
07   6129     16   1045     90      A
08     78   1046     45   8601      T
09    162    110   9700     72      G
10   6559    117    109     76      A
11    415   5875    108     65      C
12    110   6043     94    113      C
13     49   4066     98   3131      y
14    201   4324    498   2313      y
Binding TFs: RXRA_full (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains), Nuclear/hormone receptor activator site AF-1)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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