DNA Binding Motif

						

			
Accessions: MA1280.1 (JASPAR 2024), M0262 (AthalianaCistrome v4_May2016)

			
Names: DOF5.4, OBP4, OBP4.DAP, T25961;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 14
Consensus: sAAAAAGkwaawww
Weblogo: 
PSSM: P0      A      C      G      T
01    142    194    174     90      s
02    529     17     34     20      A
03    456      0      3    141      A
04    599      0      0      1      A
05    600      0      0      0      A
06    600      0      0      0      A
07      0      0    600      0      G
08     22     37    209    332      k
09    193     23    127    257      w
10    387     32    131     50      a
11    303    102     80    115      a
12    293     77     52    178      w
13    262     96     76    166      w
14    273     87     55    185      w
Type: Heterodimer
Binding TFs: Q8LDR0 / T25961 (Dof domain, zinc finger)
Q8LDR0
Binding Sites: MA1280.1.1
MA1280.1.10
MA1280.1.11
MA1280.1.12
MA1280.1.13
MA1280.1.14
MA1280.1.15
MA1280.1.16
MA1280.1.17
MA1280.1.18
MA1280.1.19
MA1280.1.2
MA1280.1.20
MA1280.1.3
MA1280.1.4
MA1280.1.5
MA1280.1.6
MA1280.1.7
MA1280.1.8
MA1280.1.9
			
Publications: Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.