DNA Binding Motif
| Accessions: | UN0334.1 (JASPAR 2024), MA1728.1 (JASPAR 2024) |
| Names: | ZNF549 |
| Organisms: | Homo sapiens |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 12 |
| Consensus: | rsTGCTGCCCwr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 1241 1009 1575 1002 r 02 1155 1430 1404 838 s 03 483 349 498 3497 T 04 72 161 4489 105 G 05 50 4622 77 78 C 06 229 175 128 4295 T 07 28 80 4566 153 G 08 55 4364 177 231 C 09 106 4435 98 188 C 10 183 4133 75 436 C 11 1828 713 889 1397 w 12 1555 787 1780 705 r |
| Type: | Heterodimer |
| Binding TFs: | Q6P9A3 (Zinc finger, C2H2 type, KRAB box, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) Q6P9A3 |
| Binding Sites: | MA1728.1.1 / UN0334.1.1 MA1728.1.10 / UN0334.1.10 MA1728.1.11 / UN0334.1.11 MA1728.1.12 / UN0334.1.12 MA1728.1.13 / UN0334.1.13 MA1728.1.14 / UN0334.1.14 MA1728.1.15 / UN0334.1.15 MA1728.1.16 / UN0334.1.16 MA1728.1.17 / UN0334.1.17 MA1728.1.18 / UN0334.1.18 MA1728.1.19 / UN0334.1.19 MA1728.1.2 / UN0334.1.2 UN0334.1.20 MA1728.1.4 / UN0334.1.3 MA1728.1.5 / UN0334.1.4 UN0334.1.5 MA1728.1.6 / UN0334.1.6 MA1728.1.7 / UN0334.1.7 MA1728.1.8 / UN0334.1.8 MA1728.1.9 / UN0334.1.9 MA1728.1.20 MA1728.1.3 |
| Publications: | Schmitges FW, Radovani E, Najafabadi HS, Barazandeh M, Campitelli LF, Yin Y, Jolma A, Zhong G, Guo H, Kanagalingam T, Dai WF, Taipale J, Emili A, Greenblatt JF, Hughes TR. Multiparameter functional diversity of human C2H2 zinc finger proteins. Genome Res 26:1742-1752 (2016). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.