DNA Binding Motif

						

			
Accessions: MA1056.1 (JASPAR 2024)

			
Names: SPL11
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 12
Consensus: taycGTACGGwy
Weblogo: 
PSSM: P0      A      C      G      T
01    229    229    229    314      t
02    314    229    229    229      a
03    172    318    172    339      y
04    147    624     63    166      c
05      0      0   1000      0      G
06      0      0      0   1000      T
07   1000      0      0      0      A
08      0   1000      0      0      C
09     21     21    936     21      G
10     21     21    773    185      G
11    572     78     78    271      w
12    188    271    188    353      y
Type: Heterodimer
Binding TFs: Q9FZK0 (SBP domain)
Q9FZK0
			
Publications: Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.