DNA Binding Motif

						

			
Accessions: UP00095A_1 (UniPROBE 20160601)

			
Names: 6430544H17Rik, MGC118413, Zfp691, Zinc finger protein 691, Znf691
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 17
Consensus: ydhacAGTGCTCmywrw
Weblogo: 
PSSM: P0      A      C      G      T
01   0.10   0.44   0.20   0.26      y
02   0.25   0.14   0.33   0.28      d
03   0.31   0.26   0.16   0.26      h
04   0.44   0.20   0.21   0.15      a
05   0.12   0.67   0.08   0.12      c
06   0.94   0.01   0.05      0      A
07      0      0   0.99   0.01      G
08   0.01      0      0   0.99      T
09   0.01      0   0.98      0      G
10   0.01   0.99      0      0      C
11      0   0.01      0   0.99      T
12      0   0.99      0      0      C
13   0.52   0.40   0.06   0.03      m
14   0.12   0.39   0.15   0.34      y
15   0.31   0.17   0.13   0.40      w
16   0.39   0.13   0.29   0.19      r
17   0.31   0.15   0.16   0.38      w
Binding TFs: UP00095A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Binding Sites: AAGTGCTC
ACGAGCAC
AGAGCACT
AGGAGCAC
AGGTGCTC
AGTGCTCC
AGTGCTCG
ATGAGCAC
CAGTGCTC
CGGTGCTC
GAGCACTA
GAGCACTC
GAGTACTC
GGAGCACC
GGGAGCAC
GGTGCTCA
GTGAGCAC
GTGCTCAA
GTGCTCCA
GCGAGCAC
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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