DNA Binding Motif
| Accessions: | MA1840.1 (JASPAR 2024) |
| Names: | gcm |
| Organisms: | Drosophila melanogaster |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 13 |
| Consensus: | ccrCCCGCATmyw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 2485 2711 2405 2499 c 02 2163 3398 2168 2371 c 03 4797 878 3207 1218 r 04 83 9705 110 202 C 05 162 9704 53 181 C 06 549 9113 164 274 C 07 619 384 8643 454 G 08 110 9382 132 476 C 09 9478 180 115 327 A 10 308 1335 818 7639 T 11 2562 4295 1362 1881 m 12 2462 2803 1696 3139 y 13 2721 2502 2117 2760 w |
| Type: | Heterodimer |
| Binding TFs: | Q27403 (GCM motif protein) Q27403 |
| Binding Sites: | MA1840.1.1 MA1840.1.10 / MA1840.1.18 MA1840.1.11 / MA1840.1.20 MA1840.1.12 MA1840.1.13 MA1840.1.14 MA1840.1.15 MA1840.1.16 MA1840.1.17 MA1840.1.18 MA1840.1.19 MA1840.1.2 MA1840.1.20 MA1840.1.3 / MA1840.1.6 MA1840.1.4 / MA1840.1.7 MA1840.1.5 / MA1840.1.9 MA1840.1.10 / MA1840.1.6 MA1840.1.13 / MA1840.1.7 MA1840.1.14 / MA1840.1.8 MA1840.1.9 MA1840.1.11 MA1840.1.12 MA1840.1.15 MA1840.1.16 MA1840.1.17 MA1840.1.19 MA1840.1.3 MA1840.1.4 MA1840.1.5 MA1840.1.8 |
| Publications: | Schreiber J, Enderich J, Wegner M. Structural requirements for DNA binding of GCM proteins. Nucleic Acids Res 26:2337-43 (1998). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.