DNA Binding Motif

						

			
Accessions: Sox1_DBD_2 (HumanTF 1.0)

			
Names: Sox1
Organisms: Mus musculus
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 4; Possible binding to single stranded DNA
Length: 15
Consensus: aTGAATwmCATTCAt
Weblogo: 
PSSM: P0      A      C      G      T
01   1743    891    636    682      a
02     34     34     24   3951      T
03     34     14   3951      0      G
04   3951      0      0      0      A
05   3951    361      0      0      A
06      0      0      0   3951      T
07   2763     31    651   1189      w
08   1526   1025    755    645      m
09     27   3951      9     10      C
10   3951      0      0      0      A
11      0      0    248   3951      T
12      0      0      0   3951      T
13      0   3951      0     33      C
14   3951      3     24    158      A
15    527    823    622   1979      t
Binding TFs: Sox1_DBD (HMG (high mobility group) box, Domain of unknown function (DUF1898), SOX transcription factor)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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