DNA Binding Motif

						

			
Accessions: MEIS1_HOXB13 (HumanTF2 1.0)

			
Names: MEIS1_HOXB13
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 15
Consensus: symrTwAAmcTGTCa
Weblogo: 
PSSM: P0      A      C      G      T
01   2052   3797   2837    639      s
02    594   3668    291   2965      y
03   3414   3220    721   1765      m
04   3466    518   3168    510      r
05     42    491     36   6634      T
06   6634    199   1088   2775      w
07   6634     61     39    908      A
08   6634    822    109    670      A
09   2392   2154   1199    890      m
10   2920   6634   3170    587      c
11    469   1966    191   6634      T
12    724     32   6634    126      G
13    565   1658     78   6634      T
14     33   6634     20    120      C
15   6634   1027   1577   1976      a
Type: Heterodimer
Binding TFs: HOXB13_TF1 / HOXB13_TF2 (Homeobox domain)
MEIS1_TF1 (Homeobox domain, Homeobox KN domain)
HOXB13_Full (Homeobox domain, Hox protein A13 N terminal)
MEIS1_Crystal (Homeobox domain, Homeobox KN domain)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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