DNA Binding Motif
| Accessions: | 6n61_F (3D-footprint 20231221) |
| Names: | RNA polymerase sigma factor RpoD |
| Organisms: | Escherichia coli |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA and Capistruin |
| Length: | 5 |
| Consensus: | GGTTT |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 9 11 67 9 G 02 9 9 69 9 G 03 11 9 9 67 T 04 0 0 0 96 T 05 0 0 0 96 T |
| Binding TFs: | 6n61_F (Sigma-70 factor, region 1.2, Sigma-70 region 3, Sigma-70 region 2 , Sigma-70, region 4, Sigma-70, non-essential region) |
| Binding Sites: | 6n61_N 6n61_T |
| Publications: | Braffman NR, Piscotta FJ, Hauver J, Campbell EA, Link AJ, Darst SA. Structural mechanism of transcription inhibition by lasso peptides microcin J25 and capistruin. Proc Natl Acad Sci U S A 116:1273-1278 (2019). [Pubmed] |
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