DNA Binding Motif

						

			
Accessions: 3a01_AB (3D-footprint 20231221)

			
Names: Homeodomain-containing protein
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Aristaless and Clawless homeodomains bound to DNA
Length: 11
Consensus: TTAATTAATTG
Weblogo: 
PSSM: P0      A      C      G      T
01      5     10      5     76      T
02      5      5      6     80      T
03     96      0      0      0      A
04     96      0      0      0      A
05      5      6     10     75      T
06      6      5      5     80      T
07     96      0      0      0      A
08     96      0      0      0      A
09      5      1      5     85      T
10      5      6      5     80      T
11      0      0     96      0      G
Type: Heterodimer
Binding TFs: 3a01_A (Homeobox domain)
3a01_B (Homeobox domain)
Binding Sites: 3a01_C
3a01_D
			
Publications: Miyazono K, Zhi Y, Takamura Y, Nagata K, Saigo K, Kojima T, Tanokura M. Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless. The EMBO journal 29:1613-23 (2010). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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