DNA Binding Motif

						

			
Accessions: MA1349.1 (JASPAR 2024), M0219 (AthalianaCistrome v4_May2016)

			
Names: bZIP16, bZIP16.DAP, T09955;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: dwwksysACGTGGCA
Weblogo: 
PSSM: P0      A      C      G      T
01    205     70    160    159      d
02    227     52    116    199      w
03    182     60     75    277      w
04     52     28    334    180      k
05     97    174    254     69      s
06    145    170      0    279      y
07      0    302    265     27      s
08    594      0      0      0      A
09      0    586      7      1      C
10      0      7    587      0      G
11      0      0      0    594      T
12      0      0    594      0      G
13      0      0    529     65      G
14     33    561      0      0      C
15    464     22     94     14      A
Type: Heterodimer
Binding TFs: Q501B2 / T09955 (bZIP transcription factor, Basic region leucine zipper, G-box binding protein MFMR)
Q501B2
Binding Sites: MA1349.1.14
MA1349.1.17
MA1349.1.20
MA1349.1.19
MA1349.1.18
MA1349.1.9
MA1349.1.3
MA1349.1.5
MA1349.1.2
MA1349.1.15
MA1349.1.1
MA1349.1.10
MA1349.1.11
MA1349.1.12
MA1349.1.13
MA1349.1.16
MA1349.1.4
MA1349.1.6
MA1349.1.7
MA1349.1.8
			
Publications: Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.