DNA Binding Motif

						

			
Accessions: RORB_methyl_2 (HT-SELEX2 May2017)

			
Names: RORB
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 22
Consensus: wAwstRGGTCrTGACCYaswTw
Weblogo: 
PSSM: P0      A      C      G      T
01    814    411    676   1128      w
02   2807    190    215    419      A
03   1714     90    100   1281      w
04    391    969   1092    576      s
05    174    430    728   2643      t
06   2128     19    904     14      R
07      7      9   3006    133      G
08     47     35   3009     46      G
09    177    294    547   2677      T
10      0   2978      9    115      C
11   1497      9   1530      2      r
12     18    636     14   2814      T
13    121      0   2986      5      G
14   2768    346    274    180      A
15     18   3017     33     52      C
16    204   2961      2      6      C
17      4    885     14   2137      Y
18   2553    764    519    216      a
19    598    903   1096    432      s
20   1237     84     95   1753      w
21    413    167    251   2810      T
22    990    645    428    966      w
Binding TFs: RORB (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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