DNA Binding Motif

						

			
Accessions: GCM1_HOXA13 (HumanTF2 1.0)

			
Names: GCM1_HOXA13
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 14
Consensus: rTGcGGGTmaTaAa
Weblogo: 
PSSM: P0      A      C      G      T
01    568    119    335     36      r
02     40     61    109    794      T
03    237     47    667      3      G
04    111    544    138    111      c
05     86     17    904     24      G
06     20     27    904     11      G
07     16     19    904      1      G
08     20     88     30    766      T
09    550    257     46     50      m
10    904     42    342    108      a
11     77     83     42    904      T
12    904     84    179    287      a
13    904    100    105    107      A
14    904    116    375    137      a
Type: Heterodimer
Binding TFs: GCM1_TF1 (GCM motif protein)
HOXA13_TF2 (Homeobox domain, Hox protein A13 N terminal)
HOXA13_Full (Homeobox domain, Hox protein A13 N terminal)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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