DNA Binding Motif
| Accessions: | SigF_2 (DBTBS 1.0) |
| Names: | SigF_2 |
| Organisms: | Bacillus subtilis |
| Libraries: | DBTBS 1.0 1 1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed] |
| Length: | 10 |
| Consensus: | GGsmAwmmTr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0 0.11 0.83 0.05 G 02 0.04 0 0.96 0 G 03 0.03 0.48 0.48 0 s 04 0.59 0.38 0.03 0 m 05 0.81 0 0.06 0.13 A 06 0.39 0.23 0 0.39 w 07 0.56 0.29 0.14 0 m 08 0.42 0.40 0 0.17 m 09 0 0 0.07 0.93 T 10 0.48 0 0.50 0.02 r |
| Binding TFs: | SigF (Sigma-70 region 3, Sigma-70 region 2 , Sigma-70, region 4, Sigma-70, region 4) |
| Binding Sites: | bofC_1 csfC dacF_1 gerAA_1 gpr_1 katX_2 lonB sigG_1 spoIIQ spoIIR_1 spoIVB_1 sspN_1 yhcN_1 yhfM yhfW ylbB yqhQ_2 yqzG yrrR_1 ytfI ytkD_2 yuiC ywhE_1 ywnJ_1 yyaC |
| Publications: | Gomez M, Cutting S.M. BofC encodes a putative forespore regulator of the Bacillus subtilis sigma K checkpoint. Microbiology (Reading, England) 143 ( Pt 1):157-70 (1997). [Pubmed] Kuwana R, Kasahara Y, Fujibayashi M, Takamatsu H, Ogasawara N, Watabe K. Proteomics characterization of novel spore proteins of Bacillus subtilis. Microbiology (Reading, England) 148:3971-82 (2002). [Pubmed] Decatur A, Losick R. Identification of additional genes under the control of the transcription factor sigma F of Bacillus subtilis. Journal of bacteriology 178:5039-41 (1996). [Pubmed] Rong S, Rosenkrantz M.S, Sonenshein A.L. Transcriptional control of the Bacillus subtilis spoIID gene. Journal of bacteriology 165:771-9 (1986). [Pubmed] Wu J.J, Schuch R, Piggot P.J. Characterization of a Bacillus subtilis sporulation operon that includes genes for an RNA polymerase sigma factor and for a putative DD-carboxypeptidase. Journal of bacteriology 174:4885-92 (1992). [Pubmed] Schuch R, Piggot P.J. The dacF-spoIIA operon of Bacillus subtilis, encoding sigma F, is autoregulated. Journal of bacteriology 176:4104-10 (1994). [Pubmed] Feavers I.M, Foulkes J, Setlow B, Sun D, Nicholson W, Setlow P, Moir A. The regulation of transcription of the gerA spore germination operon of Bacillus subtilis. Molecular microbiology 4:275-82 (1990). [Pubmed] Sussman M.D, Setlow P. Cloning, nucleotide sequence, and regulation of the Bacillus subtilis gpr gene, which codes for the protease that initiates degradation of small, acid-soluble proteins during spore germination. Journal of bacteriology 173:291-300 (1991). [Pubmed] Petersohn A, Engelmann S, Setlow P, Hecker M. The katX gene of Bacillus subtilis is under dual control of sigmaB and sigmaF. Molecular & general genetics : MGG 262:173-9 (1999). [Pubmed] Bagyan I, Casillas-Martinez L, Setlow P. The katX gene, which codes for the catalase in spores of Bacillus subtilis, is a forespore-specific gene controlled by sigmaF, and KatX is essential for hydrogen peroxide resistance of the germinating spore. Journal of bacteriology 180:2057-62 (1998). [Pubmed] Serrano M, Hövel S, Moran C.P, Henriques A.O, Völker U. Forespore-specific transcription of the lonB gene during sporulation in Bacillus subtilis. Journal of bacteriology 183:2995-3003 (2001). [Pubmed] Sun D.X, Cabrera-Martinez R.M, Setlow P. Control of transcription of the Bacillus subtilis spoIIIG gene, which codes for the forespore-specific transcription factor sigma G. Journal of bacteriology 173:2977-84 (1991). [Pubmed] Amaya E, Khvorova A, Piggot P.J. Analysis of promoter recognition in vivo directed by sigma(F) of Bacillus subtilis by using random-sequence oligonucleotides. Journal of bacteriology 183:3623-30 (2001). [Pubmed] Londoño-Vallejo J.A, Fréhel C, Stragier P. SpoIIQ, a forespore-expressed gene required for engulfment in Bacillus subtilis. Molecular microbiology 24:29-39 (1997). [Pubmed] Karow M.L, Glaser P, Piggot P.J. Identification of a gene, spoIIR, that links the activation of sigma E to the transcriptional activity of sigma F during sporulation in Bacillus subtilis. Proceedings of the National Academy of Sciences of the United States of America 92:2012-6 (1995). [Pubmed] Gomez M, Cutting S.M. Expression of the Bacillus subtilis spoIVB gene is under dual sigma F/sigma G control. Microbiology (Reading, England) 142 ( Pt 12):3453-7 (1996). [Pubmed] Cabrera-Hernandez A, Sanchez-Salas J.L, Paidhungat M, Setlow P. Regulation of four genes encoding small, acid-soluble spore proteins in Bacillus subtilis. Gene 232:1-10 (1999). [Pubmed] Wang S.T, Setlow B, Conlon E.M, Lyon J.L, Imamura D, Sato T, Setlow P, Losick R, Eichenberger P. The forespore line of gene expression in Bacillus subtilis. Journal of molecular biology 358:16-37 (2006). [Pubmed] Bagyan I, Noback M, Bron S, Paidhungat M, Setlow P. Characterization of yhcN, a new forespore-specific gene of Bacillus subtilis. Gene 212:179-88 (1998). [Pubmed] RamÃrez M.I, Castellanos-Juárez F.X, Yasbin R.E, Pedraza-Reyes M. The ytkD (mutTA) gene of Bacillus subtilis encodes a functional antimutator 8-Oxo-(dGTP/GTP)ase and is under dual control of sigma A and sigma F RNA polymerases. Journal of bacteriology 186:1050-9 (2004). [Pubmed] Pedersen L.B, Ragkousi K, Cammett T.J, Melly E, Sekowska A, Schopick E, Murray T, Setlow P. Characterization of ywhE, which encodes a putative high-molecular-weight class A penicillin-binding protein in Bacillus subtilis. Gene 246:187-96 (2000). [Pubmed] |
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