DNA Binding Motif
| Accessions: | SpoIIID (DBTBS 1.0) |
| Names: | SpoIIID |
| Organisms: | Bacillus subtilis |
| Libraries: | DBTBS 1.0 1 1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed] |
| Length: | 9 |
| Consensus: | wGGACArGC |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.33 0 0.19 0.48 w 02 0.21 0 0.77 0.03 G 03 0.24 0 0.76 0 G 04 0.92 0 0.08 0 A 05 0.03 0.97 0 0 C 06 0.88 0 0.08 0.04 A 07 0.44 0 0.53 0.03 r 08 0 0.11 0.89 0 G 09 0.03 0.73 0 0.25 C |
| Binding TFs: | SpoIIID (Stage III sporulation protein D) |
| Binding Sites: | bofA_2 bofA_3 cotC_4 cotD_4 cotD_5 cotD_6 cotJA_2 cotX_4 spoIID_2 spoIIIAA_2 spoIVCA_2 spoIVCA_3 spoIVCB_5 spoIVCB_6 spoIVCB_7 spoVD_2 spoVD_3 spoVE_3 spoVE_4 |
| Publications: | Ireton K, Grossman A.D. Interactions among mutations that cause altered timing of gene expression during sporulation in Bacillus subtilis. Journal of bacteriology 174:3185-95 (1992). [Pubmed] Halberg R, Kroos L. Sporulation regulatory protein SpoIIID from Bacillus subtilis activates and represses transcription by both mother-cell-specific forms of RNA polymerase. Journal of molecular biology 243:425-36 (1994). [Pubmed] Eichenberger P, Fujita M, Jensen S.T, Conlon E.M, Rudner D.Z, Wang S.T, Ferguson C, Haga K, Sato T, Liu J.S, Losick R. The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis. PLoS biology 2:e328 (2004). [Pubmed] Ichikawa H, Kroos L. Combined action of two transcription factors regulates genes encoding spore coat proteins of Bacillus subtilis. The Journal of biological chemistry 275:13849-55 (2000). [Pubmed] Henriques A.O, Beall B.W, Roland K, Moran C.P. Characterization of cotJ, a sigma E-controlled operon affecting the polypeptide composition of the coat of Bacillus subtilis spores. Journal of bacteriology 177:3394-406 (1995). [Pubmed] Zhang B, Daniel R.A, Errington J, Kroos L. Bacillus subtilis SpoIIID protein binds to two sites in the spoVD promoter and represses transcription by sigmaE RNA polymerase. Journal of bacteriology 179:972-5 (1997). [Pubmed] |
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