DNA Binding Motif

						

			
Accessions: 1ga5_F (3D-footprint 20231221)

			
Names: ORPHAN NUCLEAR RECEPTOR NR1D1
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT
Length: 5
Consensus: tGaCC
Weblogo: 
PSSM: P0      A      C      G      T
01     16     13     13     54      t
02      0      0     96      0      G
03     54     13     13     16      a
04      0     96      0      0      C
05      0     96      0      0      C
Binding TFs: 1ga5_F (Zinc finger, C4 type (two domains))
Binding Sites: 1ga5_G
1ga5_H
			
Publications: Sierk M.L, Zhao Q, Rastinejad F. DNA deformability as a recognition feature in the reverb response element. Biochemistry 40:12833-43 (2001). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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