DNA Binding Motif

						

			
Accessions: 1rcs_AB (3D-footprint 20231221)

			
Names: TRP REPRESSOR
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: NMR STUDY OF TRP REPRESSOR-OPERATOR DNA COMPLEX
Length: 18
Consensus: GTACnAGnnnnCTaGTAC
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0     96      0      G
02      0      0      0     96      T
03     86      1      9      0      A
04      0     96      0      0      C
05     24     24     24     24      n
06     96      0      0      0      A
07     11      9     67      9      G
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12      9     67      9     11      C
13      7      4      4     81      T
14     57      9     16     14      a
15      0      0     96      0      G
16      0      4      1     91      T
17     96      0      0      0      A
18      0     96      0      0      C
Binding TFs: 1rcs_A / 1rcs_B (Trp repressor protein)
Binding Sites: 1rcs_E / 1rcs_F
			
Publications: Zhang H, Zhao D, Revington M, Lee W, Jia X, Arrowsmith C, Jardetzky O. The solution structures of the trp repressor-operator DNA complex. Journal of molecular biology 238:592-614 (1994). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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