DNA Binding Motif

						

			
Accessions: FOXA1_2 (HT-SELEX2 May2017)

			
Names: FOXA1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 12
Consensus: ywrtGTAMAyAa
Weblogo: 
PSSM: P0      A      C      G      T
01    120    252    181    274      y
02    281     44     46    545      w
03    380      0    446      0      r
04    180      0    328    826      t
05      0      0    826     19      G
06      0     45     51    826      T
07    826    254     46      0      A
08    601    225     11      1      M
09    826      0     51     81      A
10      3    416      3    410      y
11    826     27      6     10      A
12    317    171    137    201      a
Binding TFs: FOXA1 (Fork head domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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