DNA Binding Motif
| Accessions: | UP00074A_2 (UniPROBE 20160601) |
| Names: | IFN-alpha-responsive transcription factor subunit, interferon dependent positive acting transcription factor 3 gamma, Interferon-stimulated gene factor 3 gamma, Irf-9, ISGF-3 gamma, ISGF3 p48 subunit, Isgf3g, Transcriptional regulator ISGF3 gamma subunit |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 14 |
| Consensus: | gsaaAAcabkactr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.11 0.18 0.48 0.23 g 02 0.22 0.35 0.32 0.11 s 03 0.53 0.14 0.16 0.17 a 04 0.60 0.06 0.15 0.20 a 05 0.79 0.05 0.07 0.09 A 06 0.78 0.03 0.11 0.08 A 07 0.12 0.59 0.23 0.07 c 08 0.64 0.07 0.11 0.19 a 09 0.11 0.26 0.31 0.33 b 10 0.21 0.07 0.30 0.42 k 11 0.64 0.09 0.09 0.18 a 12 0.19 0.54 0.13 0.15 c 13 0.19 0.24 0.18 0.39 t 14 0.39 0.11 0.28 0.22 r |
| Binding TFs: | UP00074A (Interferon regulatory factor transcription factor) |
| Binding Sites: | AAACGAAA AACCGAAA AACGAAAC AAGTTTCG ACCGAAAC ACGAAACT AGCGAAAC AGTTTCGA AGTTTCGC AGTTTCGG ATCGAAAC CAGTTTCG CGAAACCA CGAAACCG CGAAACTA CGAAACTC CTCGAAAC GAAACTTA GGTTTCGA GTTTCGAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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