DNA Binding Motif

						

			
Accessions: MA1265.1 (JASPAR 2024), M0070 (AthalianaCistrome v4_May2016)

			
Names: AT4G31060, ERF015, At4g31060.DAP, T18078;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 20
Consensus: cCACCGaCAmhwyyrccrmm
Weblogo: 
PSSM: P0      A      C      G      T
01     37    362     56    138      c
02     10    562      0     21      C
03    494      0     93      6      A
04      0    593      0      0      C
05      0    593      0      0      C
06      0      0    593      0      G
07    387    103      5     98      a
08      0    593      0      0      C
09    427      7    122     37      A
10    221    197     75    100      m
11    222    173     34    164      h
12    203     61    147    182      w
13    137    217     83    156      y
14    113    285     38    157      y
15    191     95    175    132      r
16    144    208     95    146      c
17    107    277     78    131      c
18    181    113    170    129      r
19    153    193    100    147      m
20    149    232     82    130      m
Type: Heterodimer
Binding TFs: Q6NLD5 / T18078 (AP2 domain)
Q6NLD5
Binding Sites: MA1265.1.1
MA1265.1.10
MA1265.1.11
MA1265.1.12
MA1265.1.13
MA1265.1.14
MA1265.1.15
MA1265.1.16
MA1265.1.17
MA1265.1.18
MA1265.1.19
MA1265.1.2
MA1265.1.20
MA1265.1.3
MA1265.1.4
MA1265.1.5
MA1265.1.6
MA1265.1.7
MA1265.1.8
MA1265.1.9
			
Publications: Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.