DNA Binding Motif

						

			
Accessions: 4egz_B (3D-footprint 20231221)

			
Names: Arabinose metabolism transcriptional repressor
Organisms: Bacillus subtilis, strain 168
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of AraR(DBD) in complex with operator ORR3
Length: 7
Consensus: TnnACAT
Weblogo: 
PSSM: P0      A      C      G      T
01      9      9      9     69      T
02     24     24     24     24      n
03     24     24     24     24      n
04     67      9      9     11      A
05      0     96      0      0      C
06     96      0      0      0      A
07      9      9      9     69      T
Binding TFs: 4egz_B (Bacterial regulatory proteins, gntR family, DeoR-like helix-turn-helix domain, HTH domain)
Binding Sites: 4egz_T
4egz_U
			
Publications: Jain D, Nair D.T. Spacing between core recognition motifs determines relative orientation of AraR monomers on bipartite operators. Nucleic acids research 41:639-47 (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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