DNA Binding Motif
| Accessions: | MA2339.1 (JASPAR 2024) |
| Names: | Nanog |
| Organisms: | Mus musculus |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 7 |
| Consensus: | GCAATCA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 480 164 7830 190 G 02 143 7298 93 1130 C 03 6992 400 365 907 A 04 7959 206 196 303 A 05 235 96 124 8209 T 06 348 7421 149 746 C 07 8076 131 180 277 A |
| Type: | Heterodimer |
| Binding TFs: | Q80Z64 (Homeobox domain, Homeodomain leucine-zipper encoding, Homez) Q80Z64 |
| Binding Sites: | MA2339.1.13 MA2339.1.18 / MA2339.1.3 MA2339.1.1 / MA2339.1.12 / MA2339.1.16 / MA2339.1.9 MA2339.1.10 MA2339.1.11 MA2339.1.14 / MA2339.1.20 MA2339.1.15 / MA2339.1.17 / MA2339.1.7 / MA2339.1.8 MA2339.1.19 MA2339.1.2 MA2339.1.4 MA2339.1.5 MA2339.1.6 |
| Publications: | Avsec Z, Weilert M, Shrikumar A, Krueger S, Alexandari A, Dalal K, Fropf R, McAnany C, Gagneur J, Kundaje A, Zeitlinger J. Base-resolution models of transcription-factor binding reveal soft motif syntax. Nat Genet 53:354-366 (2021). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.