DNA Binding Motif

						

			
Accessions: RXRG_MOUSE.H10MO.C|M01333 (HOCOMOCO 10)

			
Names: Rxrg
Organisms: Mus musculus
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: RXR-related receptors (NR2){2.1.3}; Retinoid X receptors (NR2B){2.1.3.1}
Length: 17
Consensus: rAGkTCAAGGtCAgsct
Weblogo: 
PSSM: P0      A      C      G      T
01    197     32    249     22      r
02    385      4     89     22      A
03     20     10    452     18      G
04     14     20    184    282      k
05     22     25     15    438      T
06     15    455     22      8      C
07    473      9     12      6      A
08    403     23     70      4      A
09     60      2    432      6      G
10     11     27    446     16      G
11     71    110     39    280      t
12     27    370     49     54      C
13    383     25     53     39      A
14     58     70    249    123      g
15     40    223    147     90      s
16     64    254     75    107      c
17     54    102     46    298      t
Binding TFs: RXRG_MOUSE (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains), Nuclear/hormone receptor activator site AF-1)
			
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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