DNA Binding Motif

						

			
Accessions: MA0346.1 (JASPAR 2024)

			
Names: NHP6B
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 20
Consensus: yttwyywwTATAwwwwrkdv
Weblogo: 
PSSM: P0      A      C      G      T
01    182    304     99    414      y
02    217    225    216    341      t
03    135    108    107    647      t
04    376    208     77    336      w
05    195    316    111    376      y
06    154    317    143    384      y
07    393     69     26    510      w
08    578     89     51    279      w
09    169     65     16    749      T
10    807     32     67     92      A
11     92     67     32    807      T
12    749     16     65    169      A
13    279     51     89    578      w
14    510     26     69    393      w
15    461     96    121    320      w
16    372    106    111    409      w
17    465     84    336    113      r
18    202    160    302    334      k
19    287    120    339    252      d
20    287    257    252    202      v
Binding TFs: P11633 (HMG (high mobility group) box, Domain of unknown function (DUF1898))
			
Publications: Newburger D.E, Bulyk M.L. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic acids research 37:D77-82 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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