DNA Binding Motif
| Accessions: | MA2010.2 (JASPAR 2024) |
| Names: | SMB |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 7 |
| Consensus: | cAAGCAA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 418 2165 553 466 c 02 3480 45 35 42 A 03 3246 251 25 80 A 04 6 21 3530 45 G 05 8 3329 33 232 C 06 3245 115 64 178 A 07 3387 33 29 153 A |
| Type: | Heterodimer |
| Binding TFs: | Q9MA17 (No apical meristem (NAM) protein) Q9MA17 |
| Binding Sites: | MA2010.2.16 MA2010.2.2 MA2010.2.1 / MA2010.2.10 / MA2010.2.11 / MA2010.2.13 / MA2010.2.14 / MA2010.2.15 / MA2010.2.17 / MA2010.2.7 / MA2010.2.9 MA2010.2.18 / MA2010.2.8 MA2010.2.12 / MA2010.2.3 MA2010.2.19 MA2010.2.20 / MA2010.2.4 MA2010.2.5 MA2010.2.6 |
| Publications: | Zhong R, Lee C, Ye ZH. Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis. Mol Plant 3:1087-103 (2010). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.