DNA Binding Motif

						

			
Accessions: Hic1_DBD_1 (HumanTF 1.0)

			
Names: Hic1
Organisms: Mus musculus
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 4
Length: 18
Consensus: rTGCCAvCyyrTGCCAaC
Weblogo: 
PSSM: P0      A      C      G      T
01   1126    155   1647    140      r
02      1     12     14   3293      T
03    134      7   3160      2      G
04      0   2889     29      1      C
05      6   2835      1      1      C
06   2332    290      9    109      A
07    952    767   1140    107      v
08     53   2770    100    116      C
09    194   1851    247    878      y
10    185    965    591   1364      y
11   1609     35   1210     55      r
12      0     12      5   3342      T
13    137     12   3180      1      G
14      0   2887     49      6      C
15      2   2845     40      1      C
16   2022    524      9     70      A
17   1251    602    694    336      a
18     89   2612     80    219      C
Binding TFs: Hic1_DBD (Zinc finger, C2H2 type, C2H2 type zinc-finger (2 copies), Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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