DNA Binding Motif

						

			
Accessions: MA2121.1 (JASPAR 2024)

			
Names: ZNF213
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 12
Consensus: gCCCAGGCwGsr
Weblogo: 
PSSM: P0      A      C      G      T
01    119     89    403     76      g
02     26    581     52     28      C
03     18    603     34     32      C
04     15    630     34      8      C
05    577     34     54     22      A
06     10     13    661      3      G
07     12     25    639     11      G
08     16    642     22      7      C
09    229     97    124    237      w
10     42     76    519     50      G
11     61    319    260     47      s
12    216     86    330     55      r
Type: Heterodimer
Binding TFs: O14771 (Zinc finger, C2H2 type, KRAB box, SCAN domain, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
O14771
Binding Sites: MA2121.1.1
MA2121.1.10
MA2121.1.11
MA2121.1.12
MA2121.1.13 / MA2121.1.16 / MA2121.1.17 / MA2121.1.18
MA2121.1.14
MA2121.1.15
MA2121.1.19
MA2121.1.2
MA2121.1.20
MA2121.1.3
MA2121.1.4
MA2121.1.5
MA2121.1.6
MA2121.1.7
MA2121.1.8
MA2121.1.9
			
Publications: Schmitges FW, Radovani E, Najafabadi HS, Barazandeh M, Campitelli LF, Yin Y, Jolma A, Zhong G, Guo H, Kanagalingam T, Dai WF, Taipale J, Emili A, Greenblatt JF, Hughes TR. Multiparameter functional diversity of human C2H2 zinc finger proteins. Genome Res 26:1742-1752 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.