DNA Binding Motif

						

			
Accessions: SHOX_methyl_2 (HT-SELEX2 May2017)

			
Names: SHOX
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 8
Consensus: ctCrTTAr
Weblogo: 
PSSM: P0      A      C      G      T
01   2225   4195   2275   1463      c
02    943    829   1446   6470      t
03    665   6470    650    741      C
04   6436    323   6470     68      r
05    107    325      8   6470      T
06    699     83      0   6470      T
07   6470      0      0    268      A
08   2306   1008   1843   1313      r
Binding TFs: SHOX (Homeobox domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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