DNA Binding Motif
| Accessions: | 6mzm_ABTW (3D-footprint 20231221) |
| Names: | TATA-box-binding protein |
| Organisms: | Homo sapiens |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Human TFIID bound to promoter DNA and TFIIA |
| Length: | 61 |
| Consensus: | TATAAAAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCnnnCnGA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0 0 0 96 T 02 96 0 0 0 A 03 0 0 0 96 T 04 96 0 0 0 A 05 96 0 0 0 A 06 96 0 0 0 A 07 96 0 0 0 A 08 0 0 96 0 G 09 24 24 24 24 n 10 24 24 24 24 n 11 24 24 24 24 n 12 24 24 24 24 n 13 24 24 24 24 n 14 24 24 24 24 n 15 24 24 24 24 n 16 24 24 24 24 n 17 24 24 24 24 n 18 24 24 24 24 n 19 24 24 24 24 n 20 24 24 24 24 n 21 24 24 24 24 n 22 24 24 24 24 n 23 24 24 24 24 n 24 24 24 24 24 n 25 24 24 24 24 n 26 24 24 24 24 n 27 24 24 24 24 n 28 24 24 24 24 n 29 24 24 24 24 n 30 24 24 24 24 n 31 24 24 24 24 n 32 24 24 24 24 n 33 24 24 24 24 n 34 24 24 24 24 n 35 24 24 24 24 n 36 24 24 24 24 n 37 24 24 24 24 n 38 24 24 24 24 n 39 24 24 24 24 n 40 24 24 24 24 n 41 24 24 24 24 n 42 24 24 24 24 n 43 24 24 24 24 n 44 24 24 24 24 n 45 24 24 24 24 n 46 24 24 24 24 n 47 24 24 24 24 n 48 24 24 24 24 n 49 24 24 24 24 n 50 24 24 24 24 n 51 24 24 24 24 n 52 24 24 24 24 n 53 24 24 24 24 n 54 9 67 11 9 C 55 24 24 24 24 n 56 24 24 24 24 n 57 24 24 24 24 n 58 11 67 9 9 C 59 24 24 24 24 n 60 11 9 67 9 G 61 96 0 0 0 A |
| Binding TFs: | 6mzm_T (Transcription factor TFIID (or TATA-binding protein, TBP)) |
| Binding Sites: | 6mzm_V 6mzm_U |
| Publications: | Patel AB, Louder RK, Greber BJ, Grünberg S, Luo J, Fang J, Liu Y, Ranish J, Hahn S, Nogales E. Structure of human TFIID and mechanism of TBP loading onto promoter DNA. Science : (2018). [Pubmed] |
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