DNA Binding Motif

						

			
Accessions: UP00100A_2 (UniPROBE 20160601)

			
Names: AA410133, GATA binding protein 6, GATA-6, GATA-binding factor 6, Gata6, Transcription factor GATA-6
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 17
Consensus: gsgrCGATATCGsmgyd
Weblogo: 
PSSM: P0      A      C      G      T
01   0.10   0.08   0.66   0.17      g
02   0.10   0.47   0.27   0.16      s
03   0.15   0.23   0.41   0.21      g
04   0.28   0.22   0.32   0.18      r
05   0.11   0.72   0.08   0.09      C
06   0.06   0.04   0.82   0.08      G
07   0.68   0.23   0.06   0.03      A
08   0.03   0.01   0.07   0.90      T
09   0.90   0.07   0.01   0.03      A
10   0.03   0.06   0.23   0.68      T
11   0.08   0.82   0.04   0.06      C
12   0.09   0.08   0.72   0.11      G
13   0.08   0.51   0.27   0.14      s
14   0.44   0.30   0.20   0.06      m
15   0.09   0.18   0.58   0.14      g
16   0.14   0.49   0.07   0.29      y
17   0.25   0.17   0.29   0.29      d
Binding TFs: UP00100A (GATA zinc finger)
Binding Sites: AGATAACA
AAGATAAG
ACTGATAA
AGATAACG
AGATAAGA
AGATAAGC
CAGATAAG
CCTTATCA
CGAGATAA
CGATAAGA
CTCTTATC
CTGATAAC
CTGATAAG
CTTATCAA
CTTATCTA
CTTATCTC
GATAAGAA
GCTTATCA
TCTTATCA
TCAGATAA
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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